Failed to start Instruments after upgrade to java-client 3.4.1 & to the selenium 2.53

I have update the appium lib to the latest java-client 3.4.1 & to the latest selenium 2.53.
Now when I run the appium code Get the below error.

Any idea what am I missing here?

Environment info:
Mac version: 10.10.15
iPhone 5s: 9.3.1
Appium: 1.4.13

info: [debug] [INST STDERR] 2016-04-06 14:12:31.213 instruments[818:79953] Failed to start Instruments daemon on ‘SG iPhone 5s (9.2.1)’ (Could not connect to the device.)

info: [IOS_SYSLOG_ROW ] Apr 6 14:12:31 SG-iPhone-5s notification_proxy[4432] : 0x16e087000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!

info: [debug] [INST] Waiting for device to boot…
info: [debug] [INST STDERR] 2016-04-06 14:12:31.225 instruments[818:80265] WebKit Threading Violation - initial use of WebKit from a secondary thread.

info: [IOS_SYSLOG_ROW ] Apr 6 14:12:31 SG-iPhone-5s notification_proxy[4432] : 0x16e247000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!

info: [debug] [INST STDERR] 2016-04-06 14:12:31.734 instruments[818:79896] Failed to start Instruments daemon on ‘SG iPhone 5s (9.2.1)’ (Could not connect to the device.)

info: [IOS_SYSLOG_ROW ] Apr 6 14:12:31 SG-iPhone-5s notification_proxy[4432] : 0x16e087000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!

info: [IOS_SYSLOG_ROW ] Apr 6 14:12:41 SG-iPhone-5s gputoolsd[4578] : schedule invalidation <DYTransport 0x127d01ee0, error: lost transport connection (31)>

info: [IOS_SYSLOG_ROW ] Apr 6 14:12:41 SG-iPhone-5s gputoolsd[4578] : terminating daemon 0x127e0d960

info: [debug] [INST STDERR] Instruments Usage Error : Timed out waiting for device to boot: “SG iPhone 5s (9.2.1)”

info: [debug] [INSTSERVER] Instruments exited with code 255

info: [debug] Killall instruments
info: [debug] Instruments crashed on startup
info: [debug] Attempting to retry launching instruments, this is retry #1
info: [debug] Killall iOS Simulator
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:01 SG-iPhone-5s notification_proxy[4432] : 0x16e1bb000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!

info: Launching instruments

info: [debug] Attempting to run app on real device with UDID 51d8c712258a5b0ac63516aa5be9d10014b0c270
info: [debug] Spawning instruments with command: /Applications/Xcode.app/Contents/Developer/usr/bin/instruments -t /Applications/Xcode.app/Contents/Applications/Instruments.app/Contents/PlugIns/AutomationInstrument.xrplugin/Contents/Resources/Automation.tracetemplate -D /tmp/appium-instruments/instrumentscli0.trace -w 51d8c712258a5b0ac63516aa5be9d10014b0c270 beta.SkyGiraffe.SkyGiraffe -e UIASCRIPT “/Users/sgmacbookpro/Library/Application Support/appium/bootstrap/bootstrap-3951b122240c0ac8.js” -e UIARESULTSPATH /tmp/appium-instruments
info: [debug] And extra without-delay env: {}
info: [debug] And launch timeouts (in ms): {“global”:90000}

info: [debug] [INST STDERR] 2016-04-06 14:13:07.331 instruments[838:83073] WebKit Threading Violation - initial use of WebKit from a secondary thread.

info: [debug] [INST STDERR] 2016-04-06 14:13:07.381 instruments[838:83273] Failed to start Instruments daemon on ‘SG iPhone 5s (9.2.1)’ (Could not connect to the device.)

info: [debug] [INST STDERR] Instruments Usage Error : Specified target process is invalid: beta.SkyGiraffe.SkyGiraffe
instruments, version 7.2.1 (59503)
usage: instruments [-t template] [-D document] [-l timeLimit] [-i #] [-w device] [[-p pid] | [application [-e variable value] [argument …]]]
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:07 SG-iPhone-5s notification_proxy[4432] : 0x16e1bb000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!
info: [debug] [INSTSERVER] Instruments exited with code 255
info: [debug] Killall instruments
info: [debug] Instruments crashed on startup
info: [debug] Attempting to retry launching instruments, this is retry #2
info: [debug] Killall iOS Simulator

info: [IOS_SYSLOG_ROW ] Apr 6 14:13:07 SG-iPhone-5s gputoolsd[4579] : schedule invalidation <DYTransport 0x134e0ab40, error: lost transport connection (31)>
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:07 SG-iPhone-5s gputoolsd[4579] : terminating daemon 0x134e0a7e0

info: --> GET /wd/hub/status {}

info: [debug] Responding to client with success: {“status”:0,“value”:{“build”:{“version”:“1.4.13”,“revision”:“c75d8adcb66a75818a542fe1891a34260c21f76a”},“isShuttingDown”:false},“sessionId”:“3d7a6bea-4b1c-44ac-a9b5-e4c11cea5c8f”}

info: <-- GET /wd/hub/status 200 3.003 ms - 179 {“status”:0,“value”:{“build”:{“version”:“1.4.13”,“revision”:“c75d8adcb66a75818a542fe1891a34260c21f76a”},“isShuttingDown”:false},“sessionId”:“3d7a6bea-4b1c-44ac-a9b5-e4c11cea5c8f”}
info: --> GET /wd/hub/status {}
info: [debug] Responding to client with success: {“status”:0,“value”:{“build”:{“version”:“1.4.13”,“revision”:“c75d8adcb66a75818a542fe1891a34260c21f76a”},“isShuttingDown”:false},“sessionId”:“3d7a6bea-4b1c-44ac-a9b5-e4c11cea5c8f”}
info: <-- GET /wd/hub/status 200 1.684 ms - 179 {“status”:0,“value”:{“build”:{“version”:“1.4.13”,“revision”:“c75d8adcb66a75818a542fe1891a34260c21f76a”},“isShuttingDown”:false},“sessionId”:“3d7a6bea-4b1c-44ac-a9b5-e4c11cea5c8f”}

info: Launching instruments
info: [debug] Attempting to run app on real device with UDID 51d8c712258a5b0ac63516aa5be9d10014b0c270
info: [debug] Spawning instruments with command: /Applications/Xcode.app/Contents/Developer/usr/bin/instruments -t /Applications/Xcode.app/Contents/Applications/Instruments.app/Contents/PlugIns/AutomationInstrument.xrplugin/Contents/Resources/Automation.tracetemplate -D /tmp/appium-instruments/instrumentscli0.trace -w 51d8c712258a5b0ac63516aa5be9d10014b0c270 beta.SkyGiraffe.SkyGiraffe -e UIASCRIPT “/Users/sgmacbookpro/Library/Application Support/appium/bootstrap/bootstrap-3951b122240c0ac8.js” -e UIARESULTSPATH /tmp/appium-instruments
info: [debug] And extra without-delay env: {}
info: [debug] And launch timeouts (in ms): {“global”:90000}

info: [debug] [INST STDERR] 2016-04-06 14:13:13.483 instruments[844:83874] Failed to start Instruments daemon on ‘SG iPhone 5s (9.2.1)’ (Could not connect to the device.)

info: [debug] [INST STDERR] Instruments Usage Error : Specified target process is invalid: beta.SkyGiraffe.SkyGiraffe
info: [debug] [INST STDERR] instruments, version 7.2.1 (59503)
usage: instruments [-t template] [-D document] [-l timeLimit] [-i #] [-w device] [[-p pid] | [application [-e variable value] [argument …]]]
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:13 SG-iPhone-5s notification_proxy[4432] : 0x16e087000 -[MNPLockdownConnection receiveMessage]: lockdown_receive_message error!

info: [debug] [INSTSERVER] Instruments exited with code 255
info: [debug] Killall instruments
info: [debug] Instruments crashed on startup
info: [debug] Attempting to retry launching instruments, this is retry #3
info: [debug] Killall iOS Simulator
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:13 SG-iPhone-5s gputoolsd[4580] : schedule invalidation <DYTransport 0x13dd0f9d0, error: lost transport connection (31)>
info: [IOS_SYSLOG_ROW ] Apr 6 14:13:13 SG-iPhone-5s gputoolsd[4580] : terminating daemon 0x13dd0f630

info: Launching instruments

info: [debug] Attempting to run app on real device with UDID 51d8c712258a5b0ac63516aa5be9d10014b0c270

info: [debug] Spawning instruments with command: /Applications/Xcode.app/Contents/Developer/usr/bin/instruments -t /Applications/Xcode.app/Contents/Applications/Instruments.app/Contents/PlugIns/AutomationInstrument.xrplugin/Contents/Resources/Automation.tracetemplate -D /tmp/appium-instruments/instrumentscli0.trace -w 51d8c712258a5b0ac63516aa5be9d10014b0c270 beta.SkyGiraffe.SkyGiraffe -e UIASCRIPT “/Users/sgmacbookpro/Library/Application Support/appium/bootstrap/bootstrap-3951b122240c0ac8.js” -e UIARESULTSPATH /tmp/appium-instruments
info: [debug] And extra without-delay env: {}
info: [debug] And launch timeouts (in ms): {“global”:90000}

info: [debug] [INST STDERR] 2016-04-06 14:13:19.526 instruments[850:84207] Failed to start Instruments daemon on ‘SG iPhone 5s (9.2.1)’ (Could not connect to the device.)

info: [debug] [INST STDERR] Instruments Usage Error : Specified target process is invalid: beta.SkyGiraffe.SkyGiraffe
info: [debug] [INST STDERR] instruments, version 7.2.1 (59503)
usage: instruments [-t template] [-D document] [-l timeLimit] [-i #] [-w device] [[-p pid] | [application [-e variable value] [argument …]]]

error: Failed to start an Appium session, err was: Error: Instruments crashed on startup

In logs you connecting to 9.2.1 instead of 9.3.1

Thanks for the help.
Found the problem,
I upgraded the Mac osx & the Xcode & now it works fine.